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CTD Processing Summary CalCOFI 0602JD CTD Final Data (reprocessed/reformatted 03/2019)
Download 0602JD CTD raw cast files zipped Download 0602JD FinalQC CTD + bottle data
General CTD Notes - data acquisition cast notes, logistics, processing notes are listed below
CTD sensor corrections derived by comparing 4 secs of CTD sensor data (prior to bottle closure) to bottle samples
Dual T & S Primary Sensor Secondary Sensor
Temperature, dual SBE3 No offset or correction No offset or correction
Salinity offset (bottle - CTD salinity; > 350m only; Seabird SBE4; fliers excluded) -0.0028 -0.0032
Single sensors - note only one CTD O2 sensor                                 ml/L                                                uM/Kg
Oxygen (ml/L & uM/Kg; single Seabird SBE43) y = 1.1714x - 0.1115
R² = 0.9998
y = 1.1714x - 4.8475
R² = 0.9998
Satlantic MBARI-ISUS (SN#111 v2) deployed y = 26.983x - 7.7176
R² = 0.9974
 
Seapoint Fluorometer - linear & polynomial regressions y = 3.8201x - 0.17
R² = 0.6689

y = 2.6738x2+ 1.9054x - 0.0062
R² = 0.6968


Primary CTD O2 Sensor vs Bottle O2
  
Primary CTD O2 Sensor vs Bottle O2
ISUS Voltage vs Bottle Nitrate Seapoint Fluorometer Voltage vs Chlorophyll-a
 

General notes: Station Pattern & Cruise Track

CalCOFI 0602JD04 - 20 Feb 2006NOAA RV David Starr JordanSan Diego to San Diego

Cruise and CTD Data Processing Notes

CalCOFI 0602JD on NOAA RV David Starr Jordan successfully occupied 72  - 65 standard stations & 7 SCCOOS 20m stations. Station 83.3 51.0 was bypassed due to rough weather; PT Dume & Santa Barbara SCCOOS stations were also dropped. Twenty-one additional stations north of Line 76.7 were also occupied, bringing the total CTD casts to 96. Bottle samples were not collected by SIO-CalCOFI on the additional 21 stations. MBARI-SECRET Line 66.7 20nm stations were occupied; CTD casts on these stations were to 1000m bottom-depth permitting, seawater samples collected by MBARI. Acoustic calbration WAS performed in San Diego Bay so day 1's primary productivity experiment was skipped on the 1st station 93.3 26.7..

Seabird 911+ configuration:
Primary Temperature (#1324), Conductivity (#2206), and O2 sensor (#680), pumped (#55060); Secondary Temperature (#1049), Conductivity (#722) pumped (#52236); Wetlabs (CST-490DR) 25cm transmissometer (mislabeled Chelsea/Seatech in con; new M & B calculated during 2019 reprocessing); Seapoint chlorophyll fluorometer (SCF2483 @10x); Benthos/Datasonics Altimeter (#46604);  MBARI-ISUS v2 (#111) Nitrate sensor; remote PAR (#4544), surface PAR (SN 6369).
(Freq0=T0; Freq1=C0; Freq2=Pr; Freq3=T1; Freq4=C1; V0=Trans; V1=Fl; V2=ISUS; V3=open; V4=O21; V5=open; V6=Altimeter; V7-Remote PAR)

Voltage Sensor
V0 Trans
V1 Fluor
V2 ISUS
V3  
V4 O2
V5  
V6 Altimeter
V7 Remote PAR

CalCOFI 0602JD CTD Data Processing & Console Ops Notes

Removed salt fliers on both primary & secondary comparisons. Removed O2 fliers on regression plots.

A deep CTD casts to ~620m was performed at sta 76.7 70.0 Cast 068; Santa Monica Basin this cruise was a normal 515m cast.

Additional deep casts to ~1000m were performed on MBARI-SECRET Line 66.7 out to sta 70.

Only one O2 sensor was deployed and a SBE11v1 Deck Unit - requiring Align-CTD offset of secondary conductivity (0.073sec) was used.

General Notes: We started data acquisition AFTER deploying and 2 minutes @10m soak. Loopedit WAS applied to all casts.

CTD Setup:

Transmissometer important note:
V0 - Tr (CST490DR), new M & B were calculated from the min/max voltages in air from 8 deck tests.
Min voltage = 0.0598, Max voltage changed but highest (Deck071) was 4.8596

M  = 18.97175617
B = -1.134511019

M & B in the individual .con files were from last cruise so a new .con file (0602AllNewTrMB.xmlcon) was used on all stations since no sensors were changed during the cruise.

V1 - Seapoint Fluorometer set at 10x
V2 - ISUS Nitrate Sensor, battery powered
V3 - open
V4 - SBE43 Oxygen Sensor (only one deployed pre-2009)
V5 - open
V6 - Benthos/Datasonic Altimeter
V7 - PAR
V15 - SPAR
Sensors: T1 - SN1324; T2 - SN1049; C1 - SN2206; C2 - SN722; O2 - SN680; PAR - 4544; SPAR - SN6369

Quality Coded Casts:
Data codes were added to the following casts; some ISUS data were missing due to power failures.
Casts 001 -004 had ISUS power cable problems and no ISUS data were collected.
Cast 058 & 076 also had no ISUS data due to battery power issues.

Noted - PR offset of -0.8db was applied precast 045; PR offset of +o.1db was added back prior to cast 049

Cast 068 sta 76.7 70 was to 620m
Cast 029 Upcast - primary salt & oxygen sensor data look bad, probable bio-fouling. Data coded "9" for 40-0m; downcast data looks good.
Cast 043 Downcast - 0-20m oxygen sensor data look questionable, data coded "8"; upcast data looks fine
Cast 050 Downcast - primary salinity, secondary salinity, primary oxygen sensors look questionable, data coded "8". Upcast data look fine.
 

JRW 03/05/2019

 

CTD Processing Summary CalCOFI 0604NH CTD Final Data (reprocessed/reformatted 03/2019)
Download 0604NH CTD raw cast files zipped Download 0604NH FinalQC CTD + bottle data
General CTD Notes - data acquisition cast notes, logistics, processing notes are listed below
CTD sensor corrections derived by comparing 4 secs of CTD sensor data (prior to bottle closure) to bottle samples
Dual T & S Primary Sensor Secondary Sensor
Temperature, dual SBE3 No offset or correction No offset or correction
Salinity offset (bottle - CTD salinity; > 350m only; Seabird SBE4; fliers excluded) -0.0051 -0.0057
Single sensors - note only one CTD O2 sensor                                 ml/L                                                uM/Kg
Oxygen (ml/L & uM/Kg; single Seabird SBE43) y = 1.1759x - 0.1087
R² = 0.9994
y = 1.1759x - 4.7315
R² = 0.9994
Satlantic MBARI-ISUS (SN#111 v2) deployed y = 27.268x - 9.1806
R² = 0.9982
 
Seapoint Fluorometer - linear & polynomial regressions y = 4.3969x - 0.233
R² = 0.7658

y = 1.3938x2+ 2.6874x - 0.054
R² = 0.8021


Primary CTD O2 Sensor vs Bottle O2
  
Primary CTD O2 Sensor vs Bottle O2
ISUS Voltage vs Bottle Nitrate Seapoint Fluorometer Voltage vs Chlorophyll-a
 

General notes: Station Pattern & Cruise Track

CalCOFI 0604NH01 - 18 April 2006SIO RV New HorizonSan Diego to San Diego

Cruise and CTD Data Processing Notes

CalCOFI 0604NH on SIO RV New Horizon successfully occupied all 75 of 75 scheduled stations - 66 standard stations & 9 SCCOOS 20m stations. Acoustic calbration was not performed in San Diego Bay so day 1's primary productivity experiment was performed on the 1st station 93.3 26.7..

Seabird 911+ configuration:
Primary Temperature (#1324), Conductivity (#2206), and O2 sensor (#680), pumped (#55060); Secondary Temperature (#1049), Conductivity (#722) pumped (#52236); Wetlabs (CST-490DR) 25cm transmissometer (mislabeled Chelsea/Seatech in con; new M & B calculated during 2019 reprocessing); Seapoint chlorophyll fluorometer (SCF2483 @10x); Benthos/Datasonics Altimeter (#46604);  MBARI-ISUS v2 (#111) Nitrate sensor; remote PAR (#4544), surface PAR (SN 6369).
(Freq0=T0; Freq1=C0; Freq2=Pr; Freq3=T1; Freq4=C1; V0=Trans; V1=Fl; V2=ISUS; V3=open; V4=O21; V5=open; V6=Altimeter; V7-Remote PAR)

Voltage Sensor
V0 Trans
V1 Fluor
V2 ISUS
V3  
V4 O2
V5  
V6 Altimeter
V7 Remote PAR

CalCOFI 0604NH CTD Data Processing & Console Ops Notes

Removed salt fliers on both primary & secondary comparisons. Removed O2 fliers on regression plots.

A deep CTD casts to ~770m was NOT performed at sta 86.7 40.0 Cast 036 Santa Monica Basin this cruise - normal 515m cast.

Only one O2 sensor was deployed and a SBE11v1 Deck Unit - requiring Align-CTD offset of secondary conductivity (0.073sec) was used.

General Notes: We started data acquisition AFTER deploying and 2 minutes @10m soak. Loopedit was not applied to any cast.

CTD Setup:

Transmissometer important note:
V0 - Tr (CST490DR), new M & B were calculated from the min/max voltages in air from 8 deck tests.
Min voltage = 0.0598, Max voltage changed but highest (Deck071) was 4.8596

M  = 19.02946434
B = -1.137961967

M & B in the individual .con files were from last cruise so a new .con file (0604_NewTrMB2019.xmlcon) was used on all stations since no sensors were changed during the cruise.

V1 - Seapoint Fluorometer set at 10x
V2 - ISUS Nitrate Sensor, battery powered
V3 - open
V4 - SBE43 Oxygen Sensor (only one deployed pre-2009)
V5 - open
V6 - Benthos/Datasonic Altimeter
V7 - PAR
V15 - SPAR
Sensors: T1 - SN1324; T2 - SN1049; C1 - SN2206; C2 - SN722; O2 - SN680; PAR - 4544; SPAR - SN6369

Quality Coded Casts:
No data codes were added although some ISUS data were missing due to power failures.
Casts 001 had questionable ISUS data according to the ISUS V vs Bottle NO3 regression but station estimate may be okay, cruise estimate may be questionable
Casts 007, 041, 068, 069, 070, 071, 072: no ISUS data
Cast 010: cfg loaded was set for table-driven cast so the cast was stopped during ascent and restarted. Cast 010 & 010B upcast asc files were merged before generating CTD+bottle data csvs
Cast 014: cast was stopped during ascent and restarted. Cast 014 & 014B upcast asc files were merged before generating CTD+bottle data csvs
Cast 057: shallow cast was redone

JRW 03/01/2019

 

CTD Processing Summary CalCOFI 0607NH CTD Final Data (reprocessed/reformatted 01/2019)
Download 0607NH CTD raw cast files zipped Download 0607NH FinalQC CTD + bottle data
General CTD Notes - data acquisition cast notes, logistics, processing notes are listed below
CTD sensor corrections derived by comparing 4 secs of CTD sensor data (prior to bottle closure) to bottle samples
Dual T & S Primary Sensor Secondary Sensor
Temperature, dual SBE3 No offset or correction No offset or correction
Salinity offset (bottle - CTD salinity; > 350m only; Seabird SBE4; fliers excluded) -0.0019 0.0002
Single sensors - note only one CTD O2 sensor                                 ml/L                                                uM/Kg
Oxygen (ml/L & uM/Kg; single Seabird SBE43) y = 1.0721x ‐ 0.0708
R² = 0.9993
y = 1.0721x ‐ 3.0801
R² = 0.9993
No Satlantic MBARI-ISUS (SN#111 v2) deployed y =
R² =
 
Seapoint Fluorometer - linear & polynomial regressions y = 3.8487x ‐ 0.1484
R² = 0.7709

y = 0.8624x2 + 2.8827x ‐ 0.0548
R² = 0.7805


Primary CTD O2 Sensor vs Bottle O2
  
Primary CTD O2 Sensor vs Bottle O2
  Seapoint Fluorometer Voltage vs Chlorophyll-a
 

General notes: Station Pattern & Cruise Track

CalCOFI 0607NH08 - 24 Jul 2006SIO RV New HorizonSan Diego to San Diego

Cruise and CTD Data Processing Notes

CalCOFI 0607NH on SIO RV New Horizon successfully occupied 74 of 75 scheduled stations. One SCCOOS station, 85.4 35.8 (Pt Dume) was not occupied due to limited ship time. Acoustic calbration was not performed in San Diego Bay so day 1's primary productivity experiment was performed on the 1st station 93.3 26.7..

Seabird 911+ configuration:
Primary Temperature (#1324), Conductivity (#2206), and O2 sensor (#680), pumped (#55060); Secondary Temperature (#1049), Conductivity (#722) pumped (#52236); Wetlabs (CST-490DR) 25cm transmissometer (mislabeled Chelsea/Seatech in con; new M & B calculated during 2019 reporcessing); Seapoint chlorophyll fluorometer (SCF2483 @10x); Benthos/Datasonics Altimeter (#46604); MBARI-ISUS v2 (#111) ISUS NOT deployed this cruise (on Process cruise); remote PAR (#4544), surface PAR (SN 6369).
(Freq0=T0; Freq1=C0; Freq2=Pr; Freq3=T1; Freq4=C1; V0=Trans; V1=Fl; V2=ISUS; V3=open; V4=O21; V5=open; V6=Altimeter; V7-Remote PAR)

Voltage Sensor
V0 Trans
V1 Fluor
V2  
V3  
V4 O2
V5  
V6 Altimeter
V7 Remote PAR

CalCOFI 0607NH CTD Data Processing & Console Ops Notes

Removed salt fliers on both primary & secondary comparisons.

A deep CTD casts to 770m was performed at sta 86.7 40.0 Cast 036 Santa Monica Basin this cruise. All 24 10L bottles were tripped, seawater samples collected for regular analysis.

Only one O2 sensor was deployed and a SBE11v1 Deck Unit - requiring Align-CTD offset of secondary conductivity (0.073sec) was used.

General Notes: We started data acquisition on deck BEFORE deploying and 10m soak. It is necessary to run Loopedit to remove the noisy data from 0-10m "2-minute" soak before returning back to surface.
Some shallow casts (003, 032, 055) were not loopedited since it eliminated too much data. These casts were manually scanned for the appropriate number of scans to skip then binavg.
Cast 003 - 19080 scans were skipped when binavg, no loopedit
Cast 032 - 13058 scans were skipped when binavg, no loopedit
Cast 055 - 11790 scans were skipped when binavg, no loopedit

CTD Setup:

Transmissometer important note:
V0 - Tr (CST490DR), new M & B were calculated from the min/max voltages in air from 13 deck tests.
Min voltage = 0.0562, Max voltage changed but highest (Deck071) was 4.7741

Deck 001: 0.0574, 4.6801
Deck 007: 0.0562, 4.7314
Deck 016: 0.0562, 4.3993
Deck 019: 0.0586, 4.7558
Deck 023: 0.0562, 3.9414
Deck 027: 0.0562, 2.6606
Deck 033: 0.0562, 4.6410
Deck 047: 0.0562, 4.1905
Deck 051: 0.0562, 4.6532
Deck 057: 0.0574, 4.1819
Deck 063: 0.0574, 4.7375
Deck 067: 0.0574, 4.6484
Deck 071: 0.0562, 4.7741

M using 4.7741 & 0.0562 = 19.3598048
B = -1.08802103

M & B in the individual .con files were from last cruise so a new .con file (0607_AllCastNewTrMB.xmlcon) was used on all stations since no sensors were changed during the cruise.

V1 - Seapoint Fluorometer set at 10x
V2 - open
V3 - open
V4 - SBE43 Oxygen Sensor (only one deployed pre-2009)
V5 - open
V6 - Benthos/Datasonic Altimeter
V7 - PAR
V15 - SPAR
Sensors: T1 - SN1324; T2 - SN1049; C1 - SN2206; C2 - SN722; O2 - SN680; PAR - 4544; SPAR - SN6369

Quality Coded Casts:
Cast 065U - O2 data from 10-20m quality coded 9, due to dropout or biofouling

No ISUS this cruise so very few quality codes were needed.

JRW 01/30/2019

CTD Processing Summary CalCOFI 0610RR CTD Final Data (reprocessed/reformatted 01/2019)
Download 0610RR CTD raw cast files zipped Download 0610RR FinalQC CTD + bottle data
General CTD Notes - data acquisition cast notes, logistics, processing notes are listed below
CTD sensor corrections derived by comparing 4 secs of CTD sensor data (prior to bottle closure) to bottle samples
Dual T & S Primary Sensor Secondary Sensor
Temperature, dual SBE3 No offset or correction No offset or correction
Salinity offset (bottle - CTD salinity; > 350m only; Seabird SBE4; fliers excluded) 0.0001 -0.0017
Single sensors - note only one CTD O2 sensor                                 ml/L                                                uM/Kg
Oxygen (ml/L & uM/Kg; single Seabird SBE43) y = 1.1179x - 0.0785
R² = 0.9993
y = 1.118x - 3.4191
R² = 0.9993
Nitrate - Satlantic MBARI-ISUS (SN#111 v2) y = 30.27x - 11.578
R² = 0.977
 
Seapoint Fluorometer - linear & polynomial regressions y = 3.5642x - 0.1694
R² = 0.7932

y = 0.9656x2 + 2.1597x - 0.0152
R² = 0.851


Primary CTD O2 Sensor vs Bottle O2
  
Primary CTD O2 Sensor vs Bottle O2
ISUS Voltage vs Bottle NO3 Seapoint Fluorometer Voltage vs Chlorophyll-a
 

General notes: Station Pattern & Cruise Track

CalCOFI 0610RR21 Oct - 06 Nov 2006SIO RV Roger RevelleSan Diego to San Diego

Cruise and CTD Data Processing Notes

CalCOFI 0610RR on SIO RV Roger Revelle successfully occupied 75 of 75 scheduled stations. An extra Goericke student cast to 1025m was performed on station 067 80.100. No seawater samples were collected by SIO-CalCOFI. All 24-10L bottles were closed at 1000m. No acoustic calbration was performed in San Diego Bay so day 1's primary productivity experiment was performed on the 1st station 93.3 26.7..

Seabird 911+ configuration:
Primary Temperature (#1322), Conductivity (#2206), and O2 sensor (#680), pumped (#55060); Secondary Temperature (#6049), Conductivity (#722) pumped (#52236); Wetlabs (CST-490DR) 25cm transmissometer (mislabeled Chelsea/Seatech in con; new M & B calculated during 2019 reporcessing); Seapoint chlorophyll fluorometer (SCF2483 @10x); Benthos/Datasonics Altimeter (#46604); MBARI-ISUS v2 (#111); remote PAR (#4544), surface PAR (SN 6369).
(Freq0=T0; Freq1=C0; Freq2=Pr; Freq3=T1; Freq4=C1; V0=Trans; V1=Fl; V2=ISUS; V3=open; V4=O21; V5=open; V6=Altimeter; V7-Remote PAR)

Voltage Sensor
V0 Trans
V1 Fluor
V2 ISUS
V3  
V4 O2
V5  
V6 Altimeter
V7 Remote PAR

CalCOFI 0610RR CTD Data Processing & Console Ops Notes

Removed salt fliers on both primary & secondary comparisons.

A deep CTD casts to 1025m was performed at sta 80.0 100.0 Cast 567 this cruise. All 24 10L bottles were tripped at 1000m, no seawater samples collected for regular analysis.

Only one O2 sensor was deployed and a SBE11v1 Deck Unit - requiring Align-CTD offset of secondary conductivity (0.073sec) was used.

General Notes: We started data acquisition on deck BEFORE deploying and 10m soak. It is necessary to
run Loopedit to remove the noisy data from 0-10m "2-minute" soak before returning back to surface.
Some shallow casts (002, 003, 030, 032, 053, 054, 057, 058, 075) were not loopedited since it
eliminated too much data. These casts were manually scanned for the appropriate number of scans to
skip then binavg.
Cast 002 - had no 10m soak so data acquisition was not started right away.
Cast 003 - 19359 scans were skipped when binavg, no loopedit
Cast 030 - 11960 scans were skipped when binavg, no loopedit
Cast 032 - 11235 scans were skipped when binavg, no loopedit
Cast 053 - 15884 scans were skipped when binavg, no loopedit
Cast 054 - 36660 scans were skipped when binavg, no loopedit
Cast 057 - 7410 scans were skipped when binavg, no loopedit
Cast 058 - 12270 scans were skipped when binavg, no loopedit
Cast 075 - 14425 scans were skipped when binavg, no loopedit

CTD Setup:

Transmissometer important note:
V0 - Tr (CST490DR), new M & B were calculated from the min/max voltages in air from the 8 deck tests.
Min voltage = 0.0611, Max voltage changed but highest (Deck001) was 4.7534
(Deck013 = 4.7521; 021 = 4.7399; 043 = 4.7143; 048 = 4.6581; 055 = 4.703; 067 = 4.6923; 071 = 4.6923)
M & B in the individual .con files were from last cruise so a new .con file (0610UseForAllTr.xmlcon) was
used on all stations since no sensors were changed during the cruise.

V1 - Seapoint Fluorometer set at 10x
V2 - ISUS Nitrate Sensor
V3 - open
V4 - SBE43 Oxygen Sensor (only one deployed pre-2009)
V5 - open
V6 - Benthos/Datasonic Altimeter
V7 - PAR
V15 - SPAR
Sensors: T1 - SN1324; T2 - SN6049; C1 - SN2206; C2 - SN722; O2 - SN680; PAR - 4544; SPAR - SN6369

Casts 034 - 039 hdr & dat had wrong station number 86.8 should be 86.7, corrected in both locations, archived, & posted
Cast 036 - Santa Monica Basin station, plotted to 800m
Cast 537 - student cast to 1025m, no bottles, plotted cruise_corr O2, estChl, & estNO3

Quality Coded Casts:
Cast 008U - ISUS data from 270-320 -99'd in the asc file so the regression could do an estimated ISUS NO3
Cast 011UD - all ISUS data QC'd "9" (bad)
Cast 027U - ISU data from 0-125m QC'd "9"
Cast 028UD - all ISUS data "9"
Cast 039D - ISUS data 0-13m "9"
Cast 043D - ISUS data 0-70m "8"
Cast 043U - all ISUS data "9"
Cast 044UD - all ISUS data "9"
Cast 048D - ISUS data 139-268m "9"
Cast 048U - all ISUS data "9"
Cast 066UD - all ISUS data "9"
Cast 067UD - all ISUS data "9"

JRW 01/24/2019

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